STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3862KEGG: aav:Aave_0972 hypothetical protein. (201 aa)    
Predicted Functional Partners:
Daci_3863
KEGG: aav:Aave_0972 hypothetical protein.
      
0.773
Daci_3864
KEGG: aav:Aave_1482 ATPase AAA-2 domain protein; TIGRFAM: type VI secretion ATPase, ClpV1 family; PFAM: AAA ATPase central domain protein; Clp domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; Belongs to the ClpA/ClpB family.
       0.773
Daci_3865
PFAM: peptidase S41; KEGG: rrs:RoseRS_3207 peptidase S41.
       0.773
Daci_3861
KEGG: aav:Aave_0973 hypothetical protein.
       0.655
Daci_3866
KEGG: aav:Aave_3422 hypothetical protein.
       0.651
Daci_3867
KEGG: aav:Aave_3423 hypothetical protein.
       0.651
Daci_3860
TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: aav:Aave_1481 protein of unknown function DUF1305.
       0.545
Daci_3868
TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: aav:Aave_2127 rhs element Vgr protein.
       0.440
Daci_3869
KEGG: aav:Aave_2128 hypothetical protein.
       0.432
Daci_3870
KEGG: aav:Aave_2129 hypothetical protein.
       0.432
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.