Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Daci_3872Hypothetical protein. (156 aa)    
Predicted Functional Partners:
Daci_3869
KEGG: aav:Aave_2128 hypothetical protein.
       0.773
Daci_3870
KEGG: aav:Aave_2129 hypothetical protein.
       0.773
Daci_3871
KEGG: aav:Aave_2130 hypothetical protein.
       0.773
Daci_3868
TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: aav:Aave_2127 rhs element Vgr protein.
       0.757
Daci_3873
KEGG: aav:Aave_2133 hypothetical protein.
       0.741
Daci_3866
KEGG: aav:Aave_3422 hypothetical protein.
       0.502
Daci_3867
KEGG: aav:Aave_3423 hypothetical protein.
       0.502
Daci_3874
TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: aav:Aave_2740 YD repeat protein.
       0.442
Daci_3862
KEGG: aav:Aave_0972 hypothetical protein.
       0.432
Daci_3863
KEGG: aav:Aave_0972 hypothetical protein.
       0.432
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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