STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3874TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: aav:Aave_2740 YD repeat protein. (181 aa)    
Predicted Functional Partners:
Daci_3720
TIGRFAM: YD repeat protein; KEGG: xac:XAC3245 RhsD protein.
  
     0.765
Daci_3726
Hypothetical protein; KEGG: sdn:Sden_2437 YD repeat.
  
     0.752
Daci_3724
Rhs family protein-like protein; KEGG: pau:PA14_20520 hypothetical protein.
  
     0.746
Daci_3727
Hypothetical protein; KEGG: sdn:Sden_2437 YD repeat.
  
     0.726
Daci_3869
KEGG: aav:Aave_2128 hypothetical protein.
 
    0.675
Daci_3868
TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: aav:Aave_2127 rhs element Vgr protein.
 
  
 0.652
Daci_3871
KEGG: aav:Aave_2130 hypothetical protein.
 
     0.649
Daci_3870
KEGG: aav:Aave_2129 hypothetical protein.
 
   
 0.636
Daci_4753
TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: bbt:BBta_6813 arthrofactin synthetase/syringopeptin synthetase C-related non-ribosomal peptide synthetase.
  
  
 0.573
Daci_3856
PFAM: virulence protein SciE type; KEGG: aav:Aave_1478 virulence protein, SciE type.
 
    0.527
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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