Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_3884KEGG: rpb:RPB_3526 hypothetical protein. (242 aa)    
Predicted Functional Partners:
Daci_5330
KEGG: mms:mma_3481 hypothetical protein.
  
     0.705
Daci_0273
KEGG: rpc:RPC_2857 hypothetical protein.
 
     0.662
Daci_0969
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bpe:BP0523 probable haloacid dehalogenase.
  
     0.640
Daci_5056
KEGG: mpt:Mpe_A3729 hypothetical protein.
 
  
 0.636
Daci_0272
PFAM: PepSY-associated TM helix domain protein; KEGG: rpb:RPB_3524 PepSY-associated TM helix.
 
    0.605
Daci_3072
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bam:Bamb_5784 periplasmic sensor signal transduction histidine kinase.
  
     0.520
Daci_1525
KEGG: aav:Aave_1925 putative iron-regulated protein.
   
    0.508
Daci_6023
KEGG: aav:Aave_4750 ABC branched chain amino acid family transporter, periplasmic ligand binding protein.
  
     0.499
Daci_2944
KEGG: psp:PSPPH_1082 hypothetical protein.
  
     0.497
Daci_5301
KEGG: net:Neut_2430 hypothetical protein.
  
     0.474
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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