STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3887Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_3740 transcriptional regulator, LysR family. (316 aa)    
Predicted Functional Partners:
Daci_4405
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: pfo:Pfl_1954 transcriptional regulator, LysR family.
  
     0.701
Daci_3116
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbr:BB1024 LysR-family transcriptional regulator.
  
     0.671
Daci_5799
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_B1816 transcriptional regulator, LysR-family.
  
     0.671
Daci_5965
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbr:BB2439 probable LysR-family transcriptional regulator.
  
     0.666
Daci_3705
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_2010 transcriptional regulator, LysR family.
  
     0.663
Daci_1220
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: vei:Veis_0434 transcriptional regulator, LysR family.
  
     0.661
Daci_4979
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bam:Bamb_5073 transcriptional regulator, LysR family.
  
     0.652
Daci_2349
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: aav:Aave_2084 transcriptional regulator, LysR family.
  
     0.643
Daci_3888
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: psb:Psyr_2933 regulatory protein, TetR.
   
   0.629
Daci_4562
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_A2778 transcriptional regulator, LysR-family.
  
     0.627
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.