STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3889PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: psb:Psyr_2934 NADH:flavin oxidoreductase/NADH oxidase. (366 aa)    
Predicted Functional Partners:
Daci_3021
PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: cvi:CV_2245 flavoprotein NADH-dependent oxidoreductase.
  
  
 
0.907
Daci_0037
PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: ajs:Ajs_0022 NADH:flavin oxidoreductase/NADH oxidase.
  
  
 
0.905
Daci_3890
KEGG: bpd:BURPS668_A0697 hypothetical protein.
  
  
 0.624
Daci_3888
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: psb:Psyr_2933 regulatory protein, TetR.
  
  
 0.539
Daci_3891
PFAM: flavin reductase domain protein FMN-binding; KEGG: bur:Bcep18194_A4508 flavin reductase-like, FMN-binding.
     
 0.498
Daci_3892
KEGG: aav:Aave_2747 zinc metalloproteinase Mpr protein.
     
 0.448
Daci_3887
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_3740 transcriptional regulator, LysR family.
       0.407
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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