STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3891PFAM: flavin reductase domain protein FMN-binding; KEGG: bur:Bcep18194_A4508 flavin reductase-like, FMN-binding. (194 aa)    
Predicted Functional Partners:
Daci_3892
KEGG: aav:Aave_2747 zinc metalloproteinase Mpr protein.
       0.723
Daci_3890
KEGG: bpd:BURPS668_A0697 hypothetical protein.
  
  
 0.679
Daci_3889
PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: psb:Psyr_2934 NADH:flavin oxidoreductase/NADH oxidase.
     
 0.498
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
  
 0.423
Daci_3888
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: psb:Psyr_2933 regulatory protein, TetR.
 
     0.408
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.