STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3893PFAM: OsmC family protein; KEGG: aav:Aave_0009 OsmC family protein. (165 aa)    
Predicted Functional Partners:
Daci_1297
PFAM: Peptidoglycan-binding LysM; transport-associated; KEGG: ajs:Ajs_0533 peptidoglycan-binding LysM.
   
  
 0.671
Daci_3991
PFAM: protein of unknown function DUF883 ElaB; KEGG: ajs:Ajs_2135 protein of unknown function DUF883, ElaB.
   
  
 0.666
Daci_1014
PFAM: Ferritin Dps family protein; KEGG: ajs:Ajs_0378 ferritin, Dps family protein; Belongs to the Dps family.
 
  
 0.622
Daci_5870
PFAM: glycosyl transferase family 20; KEGG: pna:Pnap_0524 alpha,alpha-trehalose-phosphate synthase (UDP-forming).
  
    0.577
Daci_5869
HAD-superfamily hydrolase, subfamily IIB; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
  
    0.557
Daci_0945
PFAM: aldo/keto reductase; KEGG: esa:ESA_03132 hypothetical protein.
  
  
 0.534
Daci_0370
KEGG: ajs:Ajs_0255 hypothetical protein.
   
  
 0.530
Daci_1805
PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: aav:Aave_3867 transport-associated.
   
  
 0.530
Daci_3894
KEGG: hch:HCH_03995 hypothetical protein.
       0.529
Daci_0369
PFAM: CsbD family protein; KEGG: aav:Aave_0312 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
 
  
 0.524
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.