STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3910PFAM: conserved hypothetical protein; KEGG: reu:Reut_B3884 hypothetical protein. (332 aa)    
Predicted Functional Partners:
Daci_5393
PFAM: protein of unknown function DUF112 transmembrane; KEGG: aav:Aave_1070 protein of unknown function DUF112, transmembrane.
    0.775
Daci_3911
PFAM: HpcH/HpaI aldolase; KEGG: aav:Aave_4270 2-dehydro-3-deoxyglucarate aldolase; Belongs to the HpcH/HpaI aldolase family.
       0.773
Daci_3912
PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; KEGG: vei:Veis_3404 dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
       0.773
Daci_3049
PFAM: protein of unknown function DUF112 transmembrane; KEGG: rme:Rmet_5627 protein of unknown function DUF112, transmembrane.
    0.691
Daci_2520
PFAM: protein of unknown function DUF112 transmembrane; KEGG: ajs:Ajs_1644 protein of unknown function DUF112, transmembrane.
    0.618
Daci_3909
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: mpt:Mpe_A0968 putative transcription regulator transcription regulator protein.
       0.513
Daci_5394
PFAM: protein of unknown function DUF1468; KEGG: aav:Aave_1069 protein of unknown function DUF1468.
 
  
 0.409
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.