STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3917KEGG: reu:Reut_B5656 hypothetical protein. (456 aa)    
Predicted Functional Partners:
Daci_3919
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: reu:Reut_B5654 secretion protein HlyD.
 
   0.886
Daci_3918
TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: reu:Reut_B5655 heavy metal efflux pump CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
  
 0.865
Daci_2896
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: aav:Aave_4448 TonB-dependent receptor.
  
   
 0.640
Daci_2708
KEGG: azo:azo0269 hypothetical protein.
 
     0.612
Daci_5922
PFAM: conserved hypothetical protein; KEGG: mms:mma_0168 hypothetical protein.
  
     0.604
Daci_3219
KEGG: mms:mma_2209 hypothetical protein.
  
     0.552
Daci_3218
KEGG: sat:SYN_01843 hypothetical cytosolic protein.
  
     0.533
Daci_0474
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pol:Bpro_3492 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.525
Daci_3920
KEGG: rme:Rmet_5683 hypothetical protein.
       0.524
Daci_3255
PFAM: Prophage tail length tape measure; KEGG: aav:Aave_1782 prophage tail length tape measure.
  
     0.513
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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