STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3946PFAM: Pirin domain protein; KEGG: bte:BTH_I1747 pirin family protein; Belongs to the pirin family. (305 aa)    
Predicted Functional Partners:
Daci_2494
PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: ajs:Ajs_1613 extradiol ring-cleavage dioxygenase, class III enzyme, subunit B.
 
  
 0.624
Daci_3945
PFAM: Auxin Efflux Carrier; KEGG: aav:Aave_2804 auxin efflux carrier.
       0.550
Daci_2888
PFAM: isochorismatase hydrolase; KEGG: cko:CKO_02173 hypothetical protein.
 
  
 0.432
Daci_2887
PFAM: isochorismatase hydrolase; KEGG: pae:PA2419 probable hydrolase.
 
  
 0.424
Daci_3947
PFAM: integrase family protein; KEGG: pna:Pnap_4572 phage integrase; Belongs to the 'phage' integrase family.
       0.411
Daci_2889
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bmn:BMA10247_1774 transcriptional regulator, LysR family.
 
 
   0.404
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.