STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3948PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ajs:Ajs_2033 TonB-dependent receptor. (730 aa)    
Predicted Functional Partners:
Daci_3326
TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: FecR protein; sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ppf:Pput_0896 anti-FecI sigma factor, FecR.
 
  
 0.586
Daci_1450
TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: FecR protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: pen:PSEEN1038 FecR-like transmembrane sensor.
 
  
 0.547
Daci_5853
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: neu:NE1191 putative transmembrane sensor.
 
  
 0.544
Daci_4753
TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: bbt:BBta_6813 arthrofactin synthetase/syringopeptin synthetase C-related non-ribosomal peptide synthetase.
  
  
 0.542
Daci_2461
Protein TolA; TIGRFAM: TonB family protein; protein TolA; PFAM: Tol-Pal system TolA; KEGG: aav:Aave_2225 TonB family protein.
  
 
 0.535
Daci_3773
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: aav:Aave_4255 TonB family protein.
  
 
 0.535
Daci_4622
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: aav:Aave_3311 TonB family protein.
  
 
 0.535
Daci_5812
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: ajs:Ajs_2406 TonB family protein.
  
 
 0.535
Daci_1483
TIGRFAM: TonB family protein; KEGG: ajs:Ajs_3655 TonB family protein.
  
 
 0.534
Daci_2126
KEGG: ajs:Ajs_1124 hypothetical protein.
  
 
 0.534
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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