STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3953PFAM: regulatory protein TetR; KEGG: pna:Pnap_1129 transcriptional regulator, TetR family. (232 aa)    
Predicted Functional Partners:
Daci_3954
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: vei:Veis_2348 efflux transporter, RND family, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.821
Daci_3955
PFAM: acriflavin resistance protein; KEGG: pol:Bpro_1667 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
     
 0.777
Daci_3956
PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: aav:Aave_2816 methyltransferase type 11.
   
   0.689
Daci_5001
KEGG: ajs:Ajs_1190 conserved hypothetical signal peptide protein.
  
     0.645
msrA-2
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.616
Daci_3981
KEGG: ajs:Ajs_2126 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
 
 
 0.482
Daci_3957
SMART: Rhodanese domain protein; KEGG: ajs:Ajs_2027 rhodanese domain protein.
       0.480
Daci_4533
PFAM: regulatory protein TetR; KEGG: asa:ASA_3759 transcriptional regulator, TetR family.
  
     0.453
Daci_5887
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: mpt:Mpe_A3699 putative transcription regulator, TetR family.
  
     0.437
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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