Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Daci_3966Opacity protein and related surface antigens-like protein; KEGG: bch:Bcen2424_3201 porin, opacity type. (268 aa)    
Predicted Functional Partners:
Daci_4939
PFAM: outer membrane chaperone Skp (OmpH); KEGG: aav:Aave_1832 outer membrane chaperone Skp (OmpH); Belongs to the skp family.
    
 
 0.812
secA
Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family.
   
 
 0.656
Daci_3967
PFAM: isochorismatase hydrolase; KEGG: ajs:Ajs_2015 isochorismatase hydrolase.
       0.618
Daci_5096
PFAM: 17 kDa surface antigen; KEGG: pna:Pnap_1189 17 kDa surface antigen.
   
  
 0.555
Daci_3965
TIGRFAM: propionate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_2016 propionate--CoA ligase.
       0.509
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.494
Daci_3171
PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; KEGG: bam:Bamb_3853 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding.
  
     0.484
bamD
Putative transmembrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.476
Daci_5090
PFAM: NlpBDapX family lipoprotein; KEGG: ajs:Ajs_1009 NlpBDapX family lipoprotein.
   
 
 0.448
Daci_5570
Hypothetical protein.
  
 
 0.436
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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