STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_3985PFAM: glutaredoxin; KEGG: aav:Aave_2457 glutaredoxin. (266 aa)    
Predicted Functional Partners:
Daci_1501
Ribonucleoside-diphosphate reductase, alpha subunit; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
 0.866
Daci_1115
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
  
 0.796
Daci_0836
KEGG: ajs:Ajs_4003 hypothetical protein.
  
     0.767
Daci_1458
KEGG: vei:Veis_4558 hypothetical protein.
  
     0.764
Daci_0307
PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: ajs:Ajs_0169 ProQ activator of osmoprotectant transporter ProP.
 
     0.758
Daci_4929
KEGG: ajs:Ajs_2388 hypothetical protein.
  
     0.757
Daci_0881
PFAM: Sporulation domain protein; KEGG: aav:Aave_4630 sporulation domain protein.
  
     0.755
Daci_1574
PFAM: CheW domain protein; KEGG: ajs:Ajs_3576 putative CheW protein.
  
   
 0.734
Daci_3007
KEGG: ajs:Ajs_2549 hypothetical protein.
  
     0.727
Daci_2904
KEGG: aav:Aave_1802 hypothetical protein.
  
     0.714
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.