STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4005PFAM: Radical SAM domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: ajs:Ajs_2243 radical SAM N-terminal domain protein. (831 aa)    
Predicted Functional Partners:
Daci_0213
PFAM: protein of unknown function DUF344; KEGG: aav:Aave_0190 protein of unknown function DUF344.
   
    0.623
Daci_4422
PFAM: protein of unknown function DUF344; KEGG: vei:Veis_1774 protein of unknown function DUF344.
   
    0.623
Daci_4006
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: bam:Bamb_1077 transcriptional regulator, AraC family.
       0.565
Daci_4008
PFAM: monooxygenase FAD-binding; KEGG: bxe:Bxe_A2727 putative 3-(3-hydroxy-phenyl)propionate hydroxylase (MhpA).
  
    0.436
Daci_4007
Hypothetical protein.
       0.434
Daci_1478
KEGG: mca:MCA0115 oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB.
  
  
 0.416
Daci_2033
Oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.416
Daci_2783
KEGG: ajs:Ajs_1092 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
  
 0.416
ubiA
4-hydroxybenzoate polyprenyl transferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
  
  
 0.414
Daci_1318
PFAM: glycosyl transferase family 2; methyltransferase small; Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: aav:Aave_4142 glycosyl transferase, family 2.
  
  
 0.404
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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