STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4009Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; KEGG: bxe:Bxe_B1220 transcriptional regulator, LuxR family. (288 aa)    
Predicted Functional Partners:
Daci_4745
KEGG: bmn:BMA10247_0877 hypothetical protein.
  
     0.745
Daci_4365
PFAM: protein kinase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; tyrosine protein kinase; serine/threonine protein kinase; KEGG: aav:Aave_3066 serine/threonine protein kinase.
   
 
 0.575
Daci_5793
PFAM: Fimbrial protein; KEGG: rme:Rmet_2545 fimbrial protein.
  
    0.550
Daci_4008
PFAM: monooxygenase FAD-binding; KEGG: bxe:Bxe_A2727 putative 3-(3-hydroxy-phenyl)propionate hydroxylase (MhpA).
       0.548
Daci_4007
Hypothetical protein.
       0.546
Daci_3637
PFAM: ANTAR domain protein; KEGG: vei:Veis_4901 response regulator receiver and ANTAR domain protein.
  
     0.520
Daci_5120
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bxe:Bxe_A3439 transcriptional regulator, LysR family.
  
   
 0.505
Daci_2540
KEGG: dar:Daro_1107 hypothetical protein.
  
     0.496
Daci_0580
PFAM: beta-lactamase domain protein; KEGG: vei:Veis_4551 beta-lactamase domain protein.
 
 
 
 0.484
Daci_5155
PFAM: protein of unknown function DUF214; KEGG: ajs:Ajs_3114 protein of unknown function DUF214.
 
    0.460
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.