Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_4013PFAM: conserved hypothetical protein; KEGG: pol:Bpro_4524 uncharacterized protein UPF0065. (328 aa)    
Predicted Functional Partners:
Daci_4012
Amidohydrolase; KEGG: pol:Bpro_4523 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein.
       0.768
Daci_4014
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: reh:H16_B0607 transcriptional regulator, LysR-family.
 
     0.667
Daci_5394
PFAM: protein of unknown function DUF1468; KEGG: aav:Aave_1069 protein of unknown function DUF1468.
 
    0.541
Daci_3674
PFAM: Cupin 2 conserved barrel domain protein; KEGG: aav:Aave_0177 cupin 2, conserved barrel domain protein.
  
     0.472
Daci_1373
PFAM: beta-lactamase domain protein; KEGG: reu:Reut_B3706 beta-lactamase-like.
  
     0.471
Daci_2014
KEGG: vei:Veis_4644 porin, gram-negative type.
  
     0.448
Daci_0285
KEGG: ppf:Pput_3076 hypothetical protein.
 
    0.432
Daci_4991
KEGG: reh:H16_B0479 hypothetical protein.
  
     0.407
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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