Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_4039PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: pol:Bpro_0874 transport-associated. (156 aa)    
Predicted Functional Partners:
Daci_0369
PFAM: CsbD family protein; KEGG: aav:Aave_0312 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
 
    0.721
Daci_1807
PFAM: protein of unknown function DUF1328; KEGG: ajs:Ajs_3511 protein of unknown function DUF1328.
 
    0.636
Daci_4038
PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ajs:Ajs_2273 Cys/Met metabolism pyridoxal-phosphate-dependent enzymes.
       0.607
Daci_4041
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: aav:Aave_3024 diguanylate cyclase.
       0.543
Daci_4042
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: aav:Aave_3025 cobyrinic acid a,c-diamide synthase.
       0.542
Daci_4040
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; sulphate transporter; KEGG: ajs:Ajs_2275 sulphate transporter.
       0.532
Daci_4037
KEGG: ajs:Ajs_3582 alkaline phosphatase.
 
     0.491
Daci_2918
PFAM: Mammalian cell entry related domain protein; KEGG: aav:Aave_1818 mammalian cell entry related domain protein.
  
   
 0.463
Daci_1806
KEGG: aav:Aave_3865 hypothetical protein.
  
    0.452
Daci_3473
PFAM: CsbD family protein; KEGG: pna:Pnap_3279 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
  
    0.452
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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