Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_4046PFAM: Pirin domain protein; Cupin 2 conserved barrel domain protein; KEGG: ajs:Ajs_1985 pirin domain protein domain protein; Belongs to the pirin family. (233 aa)    
Predicted Functional Partners:
Daci_0908
PFAM: Pirin domain protein; KEGG: ajs:Ajs_3965 pirin domain protein domain protein; Belongs to the pirin family.
 
    0.741
Daci_4045
PFAM: DoxX family protein; KEGG: ajs:Ajs_1986 DoxX family protein.
 
  
 0.727
Daci_2494
PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: ajs:Ajs_1613 extradiol ring-cleavage dioxygenase, class III enzyme, subunit B.
 
  
 0.670
Daci_4047
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; helix-turn-helix Fis-type; LysR substrate-binding; KEGG: aav:Aave_3030 transcriptional regulator, LysR family.
   
   0.556
Daci_4044
PFAM: flavodoxin/nitric oxide synthase; KEGG: vei:Veis_4981 flavodoxin/nitric oxide synthase.
       0.480
Daci_4048
PFAM: FAD dependent oxidoreductase; KEGG: aav:Aave_3031 FAD dependent oxidoreductase.
       0.471
gluQ
Glutamate--tRNA ligase; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily.
       0.434
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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