STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4081PFAM: NLP/P60 protein; KEGG: sit:TM1040_1071 putative phage cell wall peptidase, NlpC/P60. (136 aa)    
Predicted Functional Partners:
Daci_4083
PFAM: conserved hypothetical protein; KEGG: rsq:Rsph17025_1086 hypothetical protein.
 
     0.856
Daci_4082
PFAM: conserved hypothetical protein; KEGG: nwi:Nwi_1179 hypothetical protein.
 
     0.845
Daci_4084
TIGRFAM: phage tail tape measure protein, lambda family; phage tape measure protein; PFAM: Tape measure domain; KEGG: esa:ESA_01039 hypothetical protein.
  
  
 0.828
Daci_4080
Hypothetical protein; KEGG: nwi:Nwi_0792 gene transfer agent (GTA) like protein.
 
   
 0.597
Daci_4676
Hypothetical protein; KEGG: aav:Aave_1782 prophage tail length tape measure.
 
  
 0.537
Daci_1331
Hypothetical protein; KEGG: aav:Aave_1628 prophage tail length tape measure.
  
  
 0.457
Daci_4898
PFAM: Peptidoglycan-binding LysM; Lytic transglycosylase catalytic; MLTD_N domain protein; KEGG: ajs:Ajs_1742 lytic transglycosylase, catalytic.
  
  
 0.424
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.