STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4083PFAM: conserved hypothetical protein; KEGG: rsq:Rsph17025_1086 hypothetical protein. (195 aa)    
Predicted Functional Partners:
Daci_4082
PFAM: conserved hypothetical protein; KEGG: nwi:Nwi_1179 hypothetical protein.
 
 
 
 0.969
Daci_4080
Hypothetical protein; KEGG: nwi:Nwi_0792 gene transfer agent (GTA) like protein.
 
 
   0.899
Daci_1645
PFAM: conserved hypothetical protein; KEGG: nwi:Nwi_1179 hypothetical protein.
 
 
 
 0.871
Daci_4081
PFAM: NLP/P60 protein; KEGG: sit:TM1040_1071 putative phage cell wall peptidase, NlpC/P60.
 
     0.855
Daci_1647
Hypothetical protein; KEGG: nwi:Nwi_0792 gene transfer agent (GTA) like protein.
 
 
   0.841
Daci_4084
TIGRFAM: phage tail tape measure protein, lambda family; phage tape measure protein; PFAM: Tape measure domain; KEGG: esa:ESA_01039 hypothetical protein.
  
    0.819
Daci_1632
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: bbr:BB1693 portal protein.
 
 
   0.474
Daci_3664
KEGG: rfr:Rfer_1207 aspartyl protease-like.
  
     0.439
Daci_1637
TIGRFAM: phage head-tail adaptor; PFAM: putative head-tail adaptor protein; KEGG: sit:TM1040_1063 hypothetical protein.
   
 
 0.424
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.