STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4084TIGRFAM: phage tail tape measure protein, lambda family; phage tape measure protein; PFAM: Tape measure domain; KEGG: esa:ESA_01039 hypothetical protein. (1251 aa)    
Predicted Functional Partners:
Daci_4081
PFAM: NLP/P60 protein; KEGG: sit:TM1040_1071 putative phage cell wall peptidase, NlpC/P60.
  
  
 0.828
Daci_4082
PFAM: conserved hypothetical protein; KEGG: nwi:Nwi_1179 hypothetical protein.
 
     0.826
Daci_4083
PFAM: conserved hypothetical protein; KEGG: rsq:Rsph17025_1086 hypothetical protein.
  
    0.807
Daci_3452
KEGG: eba:ebA7267 putative lysozyme.
  
    0.697
Daci_3238
KEGG: ecv:APECO1_523 hypothetical protein.
 
   
 0.582
Daci_1654
KEGG: aav:Aave_1637 hypothetical protein.
  
    0.544
Daci_4075
KEGG: aav:Aave_1637 hypothetical protein.
  
    0.544
Daci_1643
Hypothetical protein; KEGG: mms:mma_2779 uncharacterized conserved protein (possible phage related tail length tape measure protein).
 
   
 0.514
Daci_3430
PFAM: terminase GpA; KEGG: stm:STM1031 hypothetical protein.
 
    0.509
Daci_4687
PFAM: terminase GpA; KEGG: ssn:SSON_2430 putative DNA packaging protein of prophage.
 
    0.508
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.