Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_4087PFAM: tail protein 3; KEGG: psb:Psyr_2783 hypothetical protein. (217 aa)    
Predicted Functional Partners:
Daci_4092
PFAM: Pathogenesis-related transcriptional factor and ERF protein; KEGG: bvi:Bcep1808_4543 HNH endonuclease.
  
    0.568
Daci_2073
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: reh:H16_B0184 flp pilus assembly protein CpaB.
  
  
 0.566
Daci_2071
Flp pilus assembly protein ATPase CpaE-like protein; KEGG: bvi:Bcep1808_1488 response regulator receiver protein.
  
  
 0.562
Daci_4088
KEGG: mlo:mlr8015 hypothetical protein.
       0.541
Daci_4089
KEGG: xau:Xaut_3707 hypothetical protein.
       0.541
Daci_4090
KEGG: mes:Meso_1223 hypothetical protein.
       0.541
Daci_4091
KEGG: xau:Xaut_3713 hypothetical protein.
       0.541
Daci_4085
PFAM: Protein of unknown function DUF1799 phage-related; KEGG: aav:Aave_1781 hypothetical protein.
       0.528
Daci_4086
PFAM: Domain of unknown function DUF1789; KEGG: aav:Aave_1626 hypothetical protein.
       0.511
Daci_2068
PFAM: type II secretion system protein; KEGG: bam:Bamb_1407 type II secretion system protein.
  
  
 0.446
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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