Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_4097KEGG: mes:Meso_1215 hypothetical protein. (378 aa)    
Predicted Functional Partners:
Daci_4098
TIGRFAM: phage-associated protein, HI1409 family; PFAM: conserved hypothetical protein; KEGG: mlo:mlr8004 hypothetical protein.
 
   
 0.955
Daci_4095
KEGG: gbe:GbCGDNIH1_1579 hypothetical protein.
 
     0.945
Daci_4099
TIGRFAM: phage terminase, large subunit, PBSX family; PFAM: terminase large subunit; KEGG: par:Psyc_1001 phage terminase, large subunit, PBSX family.
 
   
 0.833
Daci_4100
PFAM: Terminase small subunit; KEGG: sit:TM1040_0800 terminase small subunit.
 
     0.832
Daci_4096
Hypothetical protein.
       0.771
Daci_4093
KEGG: mlo:mlr8011 hypothetical protein.
       0.546
Daci_4090
KEGG: mes:Meso_1223 hypothetical protein.
     
 0.538
Daci_4094
Hypothetical protein.
       0.533
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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