STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4100PFAM: Terminase small subunit; KEGG: sit:TM1040_0800 terminase small subunit. (210 aa)    
Predicted Functional Partners:
Daci_4099
TIGRFAM: phage terminase, large subunit, PBSX family; PFAM: terminase large subunit; KEGG: par:Psyc_1001 phage terminase, large subunit, PBSX family.
  
  
 0.881
Daci_4098
TIGRFAM: phage-associated protein, HI1409 family; PFAM: conserved hypothetical protein; KEGG: mlo:mlr8004 hypothetical protein.
 
     0.836
Daci_4097
KEGG: mes:Meso_1215 hypothetical protein.
 
     0.831
Daci_4095
KEGG: gbe:GbCGDNIH1_1579 hypothetical protein.
       0.769
Daci_4096
Hypothetical protein.
       0.752
Daci_4704
PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: vei:Veis_3755 D12 class N6 adenine-specific DNA methyltransferase.
 
    0.594
Daci_1942
TIGRFAM: phage terminase, large subunit, PBSX family; KEGG: bhe:BH09390 phage related protein.
 
  
 0.560
Daci_4093
KEGG: mlo:mlr8011 hypothetical protein.
       0.557
Daci_4094
Hypothetical protein.
       0.537
Daci_4092
PFAM: Pathogenesis-related transcriptional factor and ERF protein; KEGG: bvi:Bcep1808_4543 HNH endonuclease.
  
  
 0.526
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.