STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4102PFAM: Lambda NinG family protein; KEGG: pfl:PFL_3773 NinG protein. (191 aa)    
Predicted Functional Partners:
Daci_3238
KEGG: ecv:APECO1_523 hypothetical protein.
 
    0.763
Daci_4101
KEGG: aav:Aave_1764 hypothetical protein.
       0.737
Daci_3237
KEGG: cko:CKO_01868 hypothetical protein.
 
     0.721
Daci_4092
PFAM: Pathogenesis-related transcriptional factor and ERF protein; KEGG: bvi:Bcep1808_4543 HNH endonuclease.
 
     0.526
Daci_5754
PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: bch:Bcen2424_4448 YbaK/prolyl-tRNA synthetase associated region.
  
     0.470
Daci_3200
SMART: Pathogenesis-related transcriptional factor and ERF protein; KEGG: nha:Nham_2362 hypothetical protein.
 
     0.460
Daci_2268
PFAM: PsiF repeat protein; KEGG: ppu:PP_4851 phosphate starvation-inducible protein, PsiF precursor.
  
     0.459
Daci_0444
PFAM: copper resistance D domain protein; KEGG: rso:RSp0659 probable copper resistance D transmembrane protein.
  
     0.436
Daci_5763
PFAM: Fimbrial protein; KEGG: rme:Rmet_2545 fimbrial protein.
  
     0.429
Daci_2367
SMART: extracellular solute-binding protein family 3; KEGG: pap:PSPA7_4410 virulence sensor protein BvgS.
  
     0.424
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.