Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Daci_0138 | Daci_4113 | TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: kpn:KPN_03087 outer membrane porin, receptor for ferric enterobactin and colicins B and D. | Putative phage repressor; PFAM: peptidase S24 and S26 domain protein; KEGG: bpd:BURPS668_A2366 helix-turn-helix motif:peptidase S24, S26A and S26B. | 0.411 |
Daci_1616 | Daci_1623 | KEGG: stm:STM0902 hypothetical protein. | PFAM: helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: eba:ebA803 putative helicase. | 0.890 |
Daci_1616 | Daci_4113 | KEGG: stm:STM0902 hypothetical protein. | Putative phage repressor; PFAM: peptidase S24 and S26 domain protein; KEGG: bpd:BURPS668_A2366 helix-turn-helix motif:peptidase S24, S26A and S26B. | 0.699 |
Daci_1623 | Daci_1616 | PFAM: helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: eba:ebA803 putative helicase. | KEGG: stm:STM0902 hypothetical protein. | 0.890 |
Daci_1623 | Daci_4113 | PFAM: helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: eba:ebA803 putative helicase. | Putative phage repressor; PFAM: peptidase S24 and S26 domain protein; KEGG: bpd:BURPS668_A2366 helix-turn-helix motif:peptidase S24, S26A and S26B. | 0.830 |
Daci_3236 | Daci_4113 | PFAM: protein of unknown function DUF264; KEGG: bbr:BB3506 putative phage terminase. | Putative phage repressor; PFAM: peptidase S24 and S26 domain protein; KEGG: bpd:BURPS668_A2366 helix-turn-helix motif:peptidase S24, S26A and S26B. | 0.475 |
Daci_4112 | Daci_4113 | Hypothetical protein. | Putative phage repressor; PFAM: peptidase S24 and S26 domain protein; KEGG: bpd:BURPS668_A2366 helix-turn-helix motif:peptidase S24, S26A and S26B. | 0.564 |
Daci_4112 | Daci_4114 | Hypothetical protein. | Hypothetical protein. | 0.539 |
Daci_4112 | Daci_4115 | Hypothetical protein. | Hypothetical protein; KEGG: bbr:BB1705 phage-related putative exported protein. | 0.498 |
Daci_4113 | Daci_0138 | Putative phage repressor; PFAM: peptidase S24 and S26 domain protein; KEGG: bpd:BURPS668_A2366 helix-turn-helix motif:peptidase S24, S26A and S26B. | TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: kpn:KPN_03087 outer membrane porin, receptor for ferric enterobactin and colicins B and D. | 0.411 |
Daci_4113 | Daci_1616 | Putative phage repressor; PFAM: peptidase S24 and S26 domain protein; KEGG: bpd:BURPS668_A2366 helix-turn-helix motif:peptidase S24, S26A and S26B. | KEGG: stm:STM0902 hypothetical protein. | 0.699 |
Daci_4113 | Daci_1623 | Putative phage repressor; PFAM: peptidase S24 and S26 domain protein; KEGG: bpd:BURPS668_A2366 helix-turn-helix motif:peptidase S24, S26A and S26B. | PFAM: helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: eba:ebA803 putative helicase. | 0.830 |
Daci_4113 | Daci_3236 | Putative phage repressor; PFAM: peptidase S24 and S26 domain protein; KEGG: bpd:BURPS668_A2366 helix-turn-helix motif:peptidase S24, S26A and S26B. | PFAM: protein of unknown function DUF264; KEGG: bbr:BB3506 putative phage terminase. | 0.475 |
Daci_4113 | Daci_4112 | Putative phage repressor; PFAM: peptidase S24 and S26 domain protein; KEGG: bpd:BURPS668_A2366 helix-turn-helix motif:peptidase S24, S26A and S26B. | Hypothetical protein. | 0.564 |
Daci_4113 | Daci_4114 | Putative phage repressor; PFAM: peptidase S24 and S26 domain protein; KEGG: bpd:BURPS668_A2366 helix-turn-helix motif:peptidase S24, S26A and S26B. | Hypothetical protein. | 0.737 |
Daci_4113 | Daci_4115 | Putative phage repressor; PFAM: peptidase S24 and S26 domain protein; KEGG: bpd:BURPS668_A2366 helix-turn-helix motif:peptidase S24, S26A and S26B. | Hypothetical protein; KEGG: bbr:BB1705 phage-related putative exported protein. | 0.685 |
Daci_4114 | Daci_4112 | Hypothetical protein. | Hypothetical protein. | 0.539 |
Daci_4114 | Daci_4113 | Hypothetical protein. | Putative phage repressor; PFAM: peptidase S24 and S26 domain protein; KEGG: bpd:BURPS668_A2366 helix-turn-helix motif:peptidase S24, S26A and S26B. | 0.737 |
Daci_4114 | Daci_4115 | Hypothetical protein. | Hypothetical protein; KEGG: bbr:BB1705 phage-related putative exported protein. | 0.709 |
Daci_4115 | Daci_4112 | Hypothetical protein; KEGG: bbr:BB1705 phage-related putative exported protein. | Hypothetical protein. | 0.498 |
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