Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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Score
Daci_4113Putative phage repressor; PFAM: peptidase S24 and S26 domain protein; KEGG: bpd:BURPS668_A2366 helix-turn-helix motif:peptidase S24, S26A and S26B. (216 aa)    
Predicted Functional Partners:
Daci_1616
KEGG: stm:STM0902 hypothetical protein.
  
    0.813
Daci_4114
Hypothetical protein.
       0.737
Daci_4115
Hypothetical protein; KEGG: bbr:BB1705 phage-related putative exported protein.
       0.679
Daci_4112
Hypothetical protein.
       0.564
Daci_3236
PFAM: protein of unknown function DUF264; KEGG: bbr:BB3506 putative phage terminase.
 
   
 0.473
Daci_0138
TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: kpn:KPN_03087 outer membrane porin, receptor for ferric enterobactin and colicins B and D.
  
     0.409
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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