Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Daci_4134KEGG: pna:Pnap_4291 hypothetical protein. (149 aa)    
Predicted Functional Partners:
Daci_4135
Hypothetical protein.
       0.773
Daci_4136
Hypothetical protein.
       0.773
Daci_4137
Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; KEGG: bte:BTH_I1915 prophage CP4-57 regulatory protein (AlpA) family.
       0.574
Daci_4130
Hypothetical protein.
       0.553
Daci_4131
KEGG: xfa:XF1762 hypothetical protein.
       0.553
Daci_4132
PFAM: HNH endonuclease; KEGG: pde:Pden_3731 HNH endonuclease.
       0.553
Daci_4133
Hypothetical protein.
       0.553
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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