Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Daci_4140KEGG: xcv:XCV2416 hypothetical protein. (251 aa)    
Predicted Functional Partners:
Daci_4141
Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; KEGG: xcv:XCV2415 putative regulatory protein, AlpA family.
       0.596
Daci_4143
KEGG: xcv:XCV2413 hypothetical protein.
  
    0.549
Daci_4142
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: xcv:XCV2414 chromosome partitioning related protein.
       0.528
Daci_4144
KEGG: xcv:XCV2412 hypothetical protein.
       0.528
Daci_4145
KEGG: xfa:XF1782 hypothetical protein.
       0.482
Daci_4146
KEGG: xcv:XCV2410 hypothetical protein.
       0.477
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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