STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4148KEGG: ajs:Ajs_1447 putative integrase regulator R protein. (175 aa)    
Predicted Functional Partners:
Daci_4147
PFAM: Domain of unknown function DUF1845; KEGG: xcv:XCV2409 hypothetical protein.
       0.829
Daci_4149
PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: ajs:Ajs_1446 single-strand binding protein/primosomal replication protein N.
       0.621
Daci_4145
KEGG: xfa:XF1782 hypothetical protein.
       0.467
Daci_4146
KEGG: xcv:XCV2410 hypothetical protein.
       0.467
Daci_4144
KEGG: xcv:XCV2412 hypothetical protein.
       0.452
Daci_4143
KEGG: xcv:XCV2413 hypothetical protein.
       0.449
Daci_4142
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: xcv:XCV2414 chromosome partitioning related protein.
       0.448
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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