Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_4149PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: ajs:Ajs_1446 single-strand binding protein/primosomal replication protein N. (146 aa)    
Predicted Functional Partners:
Daci_4147
PFAM: Domain of unknown function DUF1845; KEGG: xcv:XCV2409 hypothetical protein.
 
     0.916
Daci_0817
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
     
  0.900
Daci_4150
KEGG: xcv:XCV2406 DNA topoisomerase I; TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein.
 
 
 
 0.877
Daci_4144
KEGG: xcv:XCV2412 hypothetical protein.
 
   
 0.850
Daci_4146
KEGG: xcv:XCV2410 hypothetical protein.
 
     0.845
Daci_4142
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: xcv:XCV2414 chromosome partitioning related protein.
 
  
 0.844
Daci_4145
KEGG: xfa:XF1782 hypothetical protein.
 
     0.844
Daci_4141
Phage transcriptional regulator, AlpA; PFAM: Prophage CP4-57 regulatory; KEGG: xcv:XCV2415 putative regulatory protein, AlpA family.
 
   
 0.832
Daci_4161
PFAM: helicase domain protein; KEGG: rme:Rmet_2330 helicase-like protein.
 
 
 
 0.802
dnaX
DNA polymerase III, subunits gamma and tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
   
 
 0.798
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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