STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4150KEGG: xcv:XCV2406 DNA topoisomerase I; TIGRFAM: DNA topoisomerase III; PFAM: TOPRIM domain protein; DNA topoisomerase type IA central domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein. (670 aa)    
Predicted Functional Partners:
Daci_0141
KEGG: aav:Aave_0181 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases.
 
 0.964
Daci_4149
PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: ajs:Ajs_1446 single-strand binding protein/primosomal replication protein N.
 
 
 0.926
Daci_4147
PFAM: Domain of unknown function DUF1845; KEGG: xcv:XCV2409 hypothetical protein.
 
     0.837
Daci_4144
KEGG: xcv:XCV2412 hypothetical protein.
 
  
 0.820
Daci_4145
KEGG: xfa:XF1782 hypothetical protein.
 
     0.806
Daci_4146
KEGG: xcv:XCV2410 hypothetical protein.
 
     0.806
Daci_4142
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: xcv:XCV2414 chromosome partitioning related protein.
 
   
 0.763
Daci_4190
Relaxase; PFAM: protein of unknown function DUF1528; Relaxase; KEGG: xcv:XCV2356 hypothetical protein.
 
  
 0.761
Daci_4161
PFAM: helicase domain protein; KEGG: rme:Rmet_2330 helicase-like protein.
 
 
 0.757
Daci_4179
KEGG: ajs:Ajs_1256 hypothetical protein.
 
  
 0.757
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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