Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4176KEGG: har:HEAR2017 conserved hypothetical protein; putative signal peptide. (312 aa)    
Predicted Functional Partners:
Daci_4174
KEGG: bxe:Bxe_A1189 hypothetical protein.
 
     0.959
Daci_4175
KEGG: ajs:Ajs_1402 putative secreted protein.
 
     0.959
Daci_4177
KEGG: rme:Rmet_2351 putative secreted protein.
 
     0.959
Daci_4178
KEGG: har:HEAR2019 conserved hypothetical protein; putative signal peptide.
 
     0.959
Daci_4179
KEGG: ajs:Ajs_1256 hypothetical protein.
 
     0.956
Daci_4171
PFAM: plasmid conserved hypothetical protein RAQPRD; KEGG: har:HEAR2012 conserved hypothetical protein; putative signal peptide.
 
     0.942
Daci_4180
KEGG: bxe:Bxe_A1183 hypothetical protein.
 
     0.935
Daci_4166
KEGG: ajs:Ajs_1411 putative secreted protein.
 
     0.894
Daci_4168
KEGG: bxe:Bxe_A1196 hypothetical protein.
 
     0.894
Daci_4169
KEGG: ajs:Ajs_1274 hypothetical protein.
 
     0.894
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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