Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Daci_4181PFAM: DNA repair protein RadC; KEGG: ajs:Ajs_1396 DNA repair protein RadC; Belongs to the UPF0758 family. (164 aa)    
Predicted Functional Partners:
Daci_0355
TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: aav:Aave_0295 rod shape-determining protein MreC.
  
  
 0.746
Daci_5080
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG: vei:Veis_0403 DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.693
Daci_3526
Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
 
  
 0.673
Daci_4183
PFAM: protein of unknown function DUF1527; KEGG: xcv:XCV2363 putative secreted protein.
 
     0.643
Daci_4184
KEGG: rme:Rmet_2358 hypothetical protein.
 
     0.640
mutS
DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.
 
   
 0.638
Daci_4186
KEGG: pla:Plav_3431 hypothetical protein.
 
     0.631
Daci_5276
Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes 7- methyl-GTP (m(7)GTP). May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids; Belongs to the Maf family. YceF subfamily.
  
  
 0.621
Daci_4179
KEGG: ajs:Ajs_1256 hypothetical protein.
 
   
 0.612
Daci_4178
KEGG: har:HEAR2019 conserved hypothetical protein; putative signal peptide.
 
     0.590
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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