STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4189TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: neu:NE0293 hypothetical protein. (105 aa)    
Predicted Functional Partners:
Daci_4188
KEGG: neu:NE0292 hypothetical protein.
 
  
 0.991
Daci_4190
Relaxase; PFAM: protein of unknown function DUF1528; Relaxase; KEGG: xcv:XCV2356 hypothetical protein.
 
     0.841
Daci_4171
PFAM: plasmid conserved hypothetical protein RAQPRD; KEGG: har:HEAR2012 conserved hypothetical protein; putative signal peptide.
  
     0.745
Daci_4174
KEGG: bxe:Bxe_A1189 hypothetical protein.
  
     0.743
Daci_4168
KEGG: bxe:Bxe_A1196 hypothetical protein.
  
     0.742
Daci_4211
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; KEGG: xfa:XF1719 hypothetical protein.
  
     0.742
Daci_4164
KEGG: ajs:Ajs_1279 putative secreted protein.
  
     0.736
Daci_4187
KEGG: pla:Plav_3432 hypothetical protein.
       0.722
Daci_4166
KEGG: ajs:Ajs_1411 putative secreted protein.
  
     0.719
Daci_4177
KEGG: rme:Rmet_2351 putative secreted protein.
  
     0.719
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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