Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_4190Relaxase; PFAM: protein of unknown function DUF1528; Relaxase; KEGG: xcv:XCV2356 hypothetical protein. (617 aa)    
Predicted Functional Partners:
Daci_4189
TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: neu:NE0293 hypothetical protein.
 
     0.841
Daci_4169
KEGG: ajs:Ajs_1274 hypothetical protein.
 
   
 0.821
Daci_4170
KEGG: pla:Plav_3415 hypothetical protein.
 
     0.797
Daci_4144
KEGG: xcv:XCV2412 hypothetical protein.
 
  
 0.795
Daci_4142
PFAM: Cobyrinic acid ac-diamide synthase; KEGG: xcv:XCV2414 chromosome partitioning related protein.
 
   
 0.789
Daci_4149
PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: ajs:Ajs_1446 single-strand binding protein/primosomal replication protein N.
 
   
 0.789
Daci_4184
KEGG: rme:Rmet_2358 hypothetical protein.
 
    0.789
Daci_4179
KEGG: ajs:Ajs_1256 hypothetical protein.
 
   
 0.788
Daci_4180
KEGG: bxe:Bxe_A1183 hypothetical protein.
 
   
 0.786
Daci_4164
KEGG: ajs:Ajs_1279 putative secreted protein.
 
   
 0.784
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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