STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4196KEGG: pna:Pnap_4256 hypothetical protein. (238 aa)    
Predicted Functional Partners:
Daci_4195
KEGG: pna:Pnap_4257 protein kinase.
 
   
 0.954
Daci_4194
SMART: AAA ATPase; KEGG: pna:Pnap_4258 superfamily I DNA and RNA helicases and helicase subunits-like protein.
 
     0.950
Daci_4203
PFAM: von Willebrand factor type A; KEGG: pna:Pnap_4255 von Willebrand factor, type A.
 
  
 0.847
Daci_4197
Hypothetical protein.
       0.797
Daci_4198
KEGG: hpy:HP0986 hypothetical protein.
       0.796
Daci_4192
Chromosome segregation ATPase-like protein; KEGG: hpy:HP0452 hypothetical protein.
 
     0.764
Daci_3978
TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: biotin/lipoyl attachment domain-containing protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: aav:Aave_2464 dihydrolipoamide dehydrogenase.
  
 0.756
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
   0.628
Daci_4365
PFAM: protein kinase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; tyrosine protein kinase; serine/threonine protein kinase; KEGG: aav:Aave_3066 serine/threonine protein kinase.
  
 
 0.480
Daci_0513
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
 
 0.473
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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