STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4202KEGG: hpj:jhp0057 hypothetical protein. (89 aa)    
Predicted Functional Partners:
Daci_4199
PFAM: cell divisionFtsK/SpoIIIE; KEGG: hpj:jhp0061 hypothetical protein.
 
 
 0.971
Daci_5363
PFAM: cell divisionFtsK/SpoIIIE; KEGG: ajs:Ajs_3382 cell divisionFtsK/SpoIIIE.
  
 
 0.816
Daci_4203
PFAM: von Willebrand factor type A; KEGG: pna:Pnap_4255 von Willebrand factor, type A.
       0.797
Daci_4201
KEGG: tfu:Tfu_1419 hypothetical protein.
       0.765
Daci_4204
PFAM: type III restriction protein res subunit; KEGG: aav:Aave_0162 type III restriction enzyme, res subunit.
       0.556
Daci_4205
PFAM: DNA methylase N-4/N-6 domain protein; KEGG: cte:CT0908 type III restriction system methylase.
       0.549
Daci_0376
Hypothetical protein; KEGG: nha:Nham_3087 outer membrane autotransporter barrel.
  
 
 0.528
Daci_4206
KEGG: cte:CT0907 hypothetical protein.
       0.497
Daci_4207
PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: aav:Aave_0157 helicase domain protein.
       0.497
Daci_3077
Hypothetical protein; KEGG: rca:Rcas_3732 parallel beta-helix repeat.
  
 
 0.489
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.