Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_4203PFAM: von Willebrand factor type A; KEGG: pna:Pnap_4255 von Willebrand factor, type A. (244 aa)    
Predicted Functional Partners:
Daci_4196
KEGG: pna:Pnap_4256 hypothetical protein.
 
    0.866
Daci_4195
KEGG: pna:Pnap_4257 protein kinase.
 
   
 0.818
Daci_4202
KEGG: hpj:jhp0057 hypothetical protein.
       0.798
Daci_4201
KEGG: tfu:Tfu_1419 hypothetical protein.
       0.767
Daci_4194
SMART: AAA ATPase; KEGG: pna:Pnap_4258 superfamily I DNA and RNA helicases and helicase subunits-like protein.
 
     0.743
Daci_4192
Chromosome segregation ATPase-like protein; KEGG: hpy:HP0452 hypothetical protein.
 
     0.734
Daci_4204
PFAM: type III restriction protein res subunit; KEGG: aav:Aave_0162 type III restriction enzyme, res subunit.
       0.556
Daci_4205
PFAM: DNA methylase N-4/N-6 domain protein; KEGG: cte:CT0908 type III restriction system methylase.
       0.549
Daci_4206
KEGG: cte:CT0907 hypothetical protein.
       0.497
Daci_4207
PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: aav:Aave_0157 helicase domain protein.
       0.497
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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