STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4210Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: rme:Rmet_2401 transcriptional regulator, XRE family. (106 aa)    
Predicted Functional Partners:
Daci_4211
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; KEGG: xfa:XF1719 hypothetical protein.
 
    0.834
Daci_4178
KEGG: har:HEAR2019 conserved hypothetical protein; putative signal peptide.
  
     0.577
Daci_4179
KEGG: ajs:Ajs_1256 hypothetical protein.
 
     0.577
Daci_4177
KEGG: rme:Rmet_2351 putative secreted protein.
  
     0.574
Daci_4161
PFAM: helicase domain protein; KEGG: rme:Rmet_2330 helicase-like protein.
 
  
 0.573
Daci_4174
KEGG: bxe:Bxe_A1189 hypothetical protein.
  
     0.569
Daci_4176
KEGG: har:HEAR2017 conserved hypothetical protein; putative signal peptide.
  
     0.565
Daci_4175
KEGG: ajs:Ajs_1402 putative secreted protein.
  
     0.562
Daci_4190
Relaxase; PFAM: protein of unknown function DUF1528; Relaxase; KEGG: xcv:XCV2356 hypothetical protein.
 
  
 0.558
Daci_4184
KEGG: rme:Rmet_2358 hypothetical protein.
  
     0.556
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.