Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_4213RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bxe:Bxe_B1629 sigma-24 (FecI); Belongs to the sigma-70 factor family. ECF subfamily. (202 aa)    
Predicted Functional Partners:
Daci_4215
KEGG: bxe:Bxe_B1627 putative membrane-associated protein.
  
    0.784
Daci_4214
KEGG: bch:Bcen2424_4478 hypothetical protein.
       0.779
Daci_3002
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: ajs:Ajs_2554 RNA polymerase, sigma-24 subunit, ECF subfamily.
  
   
 0.711
Daci_4217
PFAM: protein of unknown function DUF1501; KEGG: bxe:Bxe_B1625 hypothetical protein.
 
     0.664
Daci_4216
PFAM: Protein of unknown function DUF1800; KEGG: bxe:Bxe_B1626 hypothetical protein.
 
     0.655
Daci_4212
KEGG: bur:Bcep18194_B2350 hypothetical protein.
       0.634
Daci_5266
PFAM: Anti sigma-E protein RseA family protein; KEGG: ajs:Ajs_3273 anti sigma-E protein, RseA.
  
 
 0.621
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 
 0.440
Daci_2291
KEGG: hch:HCH_06792 hypothetical protein.
  
 
 0.436
Daci_3001
KEGG: ajs:Ajs_2555 putative transmembrane anti-sigma factor.
  
 
 0.436
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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