STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4216PFAM: Protein of unknown function DUF1800; KEGG: bxe:Bxe_B1626 hypothetical protein. (454 aa)    
Predicted Functional Partners:
Daci_4217
PFAM: protein of unknown function DUF1501; KEGG: bxe:Bxe_B1625 hypothetical protein.
 
     0.948
Daci_6011
PFAM: protein of unknown function DUF1501; KEGG: aav:Aave_2281 protein of unknown function DUF1501.
 
     0.779
Daci_4495
PFAM: protein of unknown function DUF1501; KEGG: aav:Aave_4705 protein of unknown function DUF1501.
 
     0.712
Daci_4213
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: bxe:Bxe_B1629 sigma-24 (FecI); Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.655
Daci_4215
KEGG: bxe:Bxe_B1627 putative membrane-associated protein.
       0.595
Daci_4214
KEGG: bch:Bcen2424_4478 hypothetical protein.
       0.592
Daci_4212
KEGG: bur:Bcep18194_B2350 hypothetical protein.
       0.481
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.