STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4234Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: aav:Aave_4555 ferric uptake regulator, Fur family; Belongs to the Fur family. (167 aa)    
Predicted Functional Partners:
Daci_4233
PFAM: nitroreductase; KEGG: bte:BTH_II1923 nitroreductase family protein.
  
  
 0.779
Daci_4235
KEGG: aav:Aave_3322 hypothetical protein.
       0.773
Daci_5072
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
  
 0.552
Daci_4905
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: aav:Aave_2639 thioredoxin; Belongs to the thioredoxin family.
  
 
 0.518
Daci_5558
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: ajs:Ajs_0741 glutamate synthase (ferredoxin).
     
 0.517
Daci_0161
PFAM: zinc finger SWIM domain protein; KEGG: hch:HCH_03960 protein containing SWIM zinc finger domain.
  
    0.497
rpoH
RNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
 
 
 0.469
Daci_4237
PFAM: cytochrome c class I; KEGG: bam:Bamb_4605 cytochrome c, class I.
 
   
 0.464
Daci_0584
KEGG: ajs:Ajs_3857 CoA-binding domain protein.
  
    0.430
rpoD
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.418
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.