Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4236PFAM: cytochrome c class I; KEGG: bur:Bcep18194_B0408 cytochrome c, class I. (343 aa)    
Predicted Functional Partners:
Daci_4237
PFAM: cytochrome c class I; KEGG: bam:Bamb_4605 cytochrome c, class I.
  
 0.979
Daci_2499
Gluconate 2-dehydrogenase (acceptor); PFAM: cytochrome c class I; KEGG: rme:Rmet_2155 cytochrome c, class I.
 
0.955
Daci_2237
PFAM: Rhodanese domain protein; KEGG: ajs:Ajs_1033 3-mercaptopyruvate sulfurtransferase.
    
 0.904
Daci_2561
PFAM: Rhodanese domain protein; KEGG: ajs:Ajs_1650 rhodanese domain protein.
    
 0.904
Daci_5151
PFAM: Rhodanese domain protein; KEGG: mms:mma_0256 thiosulfate sulfurtransferase.
    
 0.904
Daci_2985
KEGG: aav:Aave_3388 cytochrome c553-like protein.
 
  
 0.592
Daci_4238
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: ajs:Ajs_2432 integral membrane sensor signal transduction histidine kinase.
 
     0.562
Daci_2778
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
 
 0.534
Daci_3169
Gluconate 2-dehydrogenase (acceptor); PFAM: cytochrome c class I; KEGG: spe:Spro_4016 gluconate 2-dehydrogenase (acceptor).
 
 
 
 0.529
Daci_0055
PFAM: oxidoreductase molybdopterin binding; Mo-co oxidoreductase dimerisation domain; KEGG: ajs:Ajs_0035 oxidoreductase, molybdopterin binding.
 
 
 
 0.512
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.