STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4244PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ajs:Ajs_2422 4Fe-4S ferredoxin, iron-sulfur binding domain protein. (281 aa)    
Predicted Functional Partners:
Daci_4246
PFAM: molydopterin dinucleotide-binding region; KEGG: ajs:Ajs_2424 molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.997
Daci_4245
PFAM: Polysulphide reductase NrfD; KEGG: ajs:Ajs_2423 polysulphide reductase, NrfD.
 
 
 0.992
Daci_3488
TIGRFAM: formate dehydrogenase, gamma subunit; KEGG: dar:Daro_1816 formate dehydrogenase, gamma subunit.
 
 
 0.942
Daci_3141
KEGG: plu:plu2078 hypothetical protein.
  
 
 0.921
Daci_3491
PFAM: molybdopterin oxidoreductase Fe4S4 region; KEGG: bxe:Bxe_B2554 formate dehydrogenase-O, major subunit.
 
 
 0.910
Daci_2237
PFAM: Rhodanese domain protein; KEGG: ajs:Ajs_1033 3-mercaptopyruvate sulfurtransferase.
    
 0.906
Daci_2561
PFAM: Rhodanese domain protein; KEGG: ajs:Ajs_1650 rhodanese domain protein.
    
 0.906
Daci_5151
PFAM: Rhodanese domain protein; KEGG: mms:mma_0256 thiosulfate sulfurtransferase.
    
 0.906
Daci_3490
KEGG: bam:Bamb_3377 formate dehydrogenase, alpha subunit; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.894
Daci_1130
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: aav:Aave_0767 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.849
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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