STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4249PFAM: major facilitator superfamily MFS_1; KEGG: psa:PST_3102 transporter, putative. (591 aa)    
Predicted Functional Partners:
Daci_4248
PFAM: secretion protein HlyD family protein; KEGG: psa:PST_3103 probable multidrug resistance efflux pump.
 
 
 0.960
Daci_4250
PFAM: regulatory protein TetR; KEGG: xcb:XC_3478 transcriptional regulator TetR/AcrR family.
 
     0.900
Daci_4247
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: swi:Swit_0451 RND efflux system, outer membrane lipoprotein, NodT family.
  
  
 0.739
Daci_3743
PFAM: secretion protein HlyD family protein; KEGG: eba:ebA3446 putative multidrug resistance protein.
 
 
 0.628
Daci_4251
PFAM: pseudouridine synthase; KEGG: aav:Aave_2674 pseudouridine synthase.
       0.591
Daci_4252
KEGG: mgm:Mmc1_3147 protein of unknown function DUF132.
       0.574
Daci_4253
KEGG: cph:Cpha266_2656 hypothetical protein.
       0.574
Daci_4254
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: reh:H16_A0034 transcriptional regulator, GntR-family.
       0.445
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.