STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4257PFAM: major facilitator superfamily MFS_1; KEGG: reh:H16_A0031 MFS transporter, ACS family. (444 aa)    
Predicted Functional Partners:
Daci_4258
PFAM: AsmA family protein; KEGG: aav:Aave_2673 AsmA family protein.
  
    0.686
Daci_0967
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: spe:Spro_3970 major facilitator superfamily MFS_1.
  
     0.606
Daci_4256
PFAM: protein of unknown function DUF849; KEGG: reh:H16_A0032 prokaryotic protein of unknown function,predicted cytosolic protein.
       0.523
Daci_4255
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: reh:H16_A0033 short chain dehydrogenase.
  
    0.465
Daci_1603
PFAM: dihydrodipicolinate synthetase; KEGG: bbr:BB3070 probable dihydrodipicolinate synthase; Belongs to the DapA family.
  
  
 0.448
Daci_3342
PFAM: dihydrodipicolinate synthetase; KEGG: aav:Aave_1393 dihydrodipicolinate synthetase; Belongs to the DapA family.
  
  
 0.448
Daci_4254
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; KEGG: reh:H16_A0034 transcriptional regulator, GntR-family.
 
     0.400
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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