STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4258PFAM: AsmA family protein; KEGG: aav:Aave_2673 AsmA family protein. (791 aa)    
Predicted Functional Partners:
Daci_2268
PFAM: PsiF repeat protein; KEGG: ppu:PP_4851 phosphate starvation-inducible protein, PsiF precursor.
  
    0.708
Daci_4257
PFAM: major facilitator superfamily MFS_1; KEGG: reh:H16_A0031 MFS transporter, ACS family.
  
    0.686
Daci_0370
KEGG: ajs:Ajs_0255 hypothetical protein.
  
  
 0.511
Daci_4031
PFAM: protein of unknown function DUF1428; KEGG: rpe:RPE_4844 protein of unknown function DUF1428.
   
    0.507
Daci_1807
PFAM: protein of unknown function DUF1328; KEGG: ajs:Ajs_3511 protein of unknown function DUF1328.
 
    0.463
Daci_0888
PFAM: Rubrerythrin; Ferritin Dps family protein; KEGG: aav:Aave_3866 ferritin, Dps family protein.
 
    0.427
Daci_2383
TIGRFAM: lytic murein transglycosylase B; KEGG: ajs:Ajs_2817 lytic murein transglycosylase B.
  
    0.426
Daci_4039
PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: pol:Bpro_0874 transport-associated.
  
  
 0.426
Daci_4262
KEGG: ajs:Ajs_1966 hypothetical protein.
  
     0.426
Daci_1805
PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: aav:Aave_3867 transport-associated.
 
  
 0.423
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.