STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_4272PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: reu:Reut_B4613 gluconolactonase. (307 aa)    
Predicted Functional Partners:
Daci_0342
TIGRFAM: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; PFAM: Pyrrolo-quinoline quinone; KEGG: aav:Aave_0411 pyrrolo-quinoline quinone.
  
  
 0.931
Daci_0257
Gluconolactonase; PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: ajs:Ajs_1999 gluconolactonase.
  
  
 
0.926
Daci_2283
PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: pla:Plav_2454 SMP-30/gluconolaconase/LRE domain protein.
  
  
 
0.924
Daci_4738
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: vei:Veis_2069 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
  
 
 0.912
Daci_3761
TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; KEGG: ajs:Ajs_2053 carbohydrate kinase, thermoresistant glucokinase family.
    
 0.910
Daci_4273
PFAM: amidohydrolase 2; KEGG: bja:blr2281 putative 2-pyrone-4,6-dicarbaxylate hydrolase.
 
     0.790
Daci_4274
PFAM: conserved hypothetical protein; KEGG: pna:Pnap_4081 uncharacterized protein UPF0065.
       0.709
Daci_4276
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: vei:Veis_3989 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding.
 
   
 0.635
Daci_4275
PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_1121 uncharacterized protein UPF0065.
       0.600
Daci_4277
PFAM: Dimethylmenaquinone methyltransferase; KEGG: vei:Veis_3988 dimethylmenaquinone methyltransferase.
 
     0.599
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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